PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 259aa    MW: 29573.8 Da    PI: 10.4207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256090genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05121143123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H + H
  MDP0000256090 121 FVCEICNKGFQRDQNLQLHRQGH 143
                    89*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.0E-5120143IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576671.27E-6120143No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4120143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.346121143IPR007087Zinc finger, C2H2
SMARTSM003550.028121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM0035572162192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.27E-6192218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEERESSVGR RRLAQRRKWR TPKSPFLPFA KVAISALTFP LKNPQRFAVN NLGSLGPSDV  60
EEGSFSSGNN TGELEVRQDQ KQQENHLHRS SSGGAFGAQS NNPSAEVIAL SPTTLMATNQ  120
FVCEICNKGF QRDQNLQLHR QGHNLPWKLW QRTTTEVRKR VYICPEPTCV HHNPTWVLGD  180
LTGIKKHFSR KHGEKKWKWD KCSKKYAVQS DWKAHQKTCG TRDINVTVEP SFLRNFIWCL  240
MQLLQLLLLI PPGDHPGVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386763.11e-105PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA65e-70IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLM5VUF22e-94M5VUF2_PRUPE; Uncharacterized protein
STRINGGLYMA19G39640.23e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-63C2H2 family protein